Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSKKKKIVVIGRSNLQNLYIHTVLLKKLPAEIYLID---DQAKTSVQDFDYASYYHAD-VTIHSGTFNECRNADIVVFF----QEEMSNQIVSKEDNVALIIEKVKKMMATGFRGIVLVATAESNVVAALIKRFSGLSANQIITLGTMLATSYFQVEIAKLFKISPKNVHGYIIGDNAEDVIPVWSRAFLGGKPILSYLAEDQKRISAEDLQNLTKMITKIPDFPFE--NKDGCTFRFSTVTVLAELTEVILRDEARVITVGVEVKEAYGLENPVFISVPAVIGAEGVRELLELNLSDDEQKELKQIAAKTTEKLEELQLNKGGIS |
| 1LDN Chain:D ((8-305)) | ------RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK-LVESKGEEAQKDLE---RIFVNVRDAAYQIIEKKGATY-YGIAMGLARVTRAILHNENAILTVSAYLDGLYG-ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAA----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257718 for 2488 contacts (-103.6/contact) +
2D Compatibility (PS) -30530 + (NN) -9222 + (LL) 1756
1D Compatibility (HY) -28000 + (ID) 4900
Total energy: -328614.0 ( -132.08 by residue)
QMean score : 0.571
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