Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHE-AGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDKLI-LSDKDTKHPRLKDAENNFVWENK
1DZT Chain:B ((2-179))
MIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQLPELSAKDAAAPLLDQA---------
General information:
TITO was launched using:
RESULT:
Template:
1DZT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73953 for 1343 contacts (-55.1/contact) +
2D Compatibility (PS) -18647 + (NN) -3589 + (LL) 704
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -118135.0 ( -87.96 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1DZT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DZT-query.scw
PDB file :
Tito_Scwrl_1DZT.pdb
: