Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYRLVSERQ-FEEANIEEA-LTEDVVVVRPTYLSICAADQRYYTGSRGKEMLSKKLPMALIHEGVGQVTYDATG--EFEIGTKVVMIPNTPTEDD-PVIAENYRRSSLFRSSGYDGLMQENVFMRRDRVVRLPENMDMEVAAYSELISVAFHAITRFKQKANANQSVFGVWGDGNLGFITCLLLKTIYPESKVIIFGKTQYKLDFF-S-FVDEAHLVDE---------IPEGLVIDNAFECAGGKGSQYAVEQIIDLIKPEGTISLLGVSENPIEFNSR-MVLEKGLTVFGSSRS-GKEDFQNTVNFLSENERAVEYLSSLIGQRK-VVRNLQDIIEAFETDLRNPFGKTVMEWKV |
| 2D8A Chain:A ((3-347)) | EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQ-SRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY----------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLA--G--PISGKSVLITGAGPLGLLGIAVAKA-SGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQ-SGKL--NLDPIITHKYKG---FDKYEEAFELMRAGKTGKVVFML-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204114 for 2716 contacts (-75.2/contact) +
2D Compatibility (PS) -34184 + (NN) -10058 + (LL) 2236
1D Compatibility (HY) -9200 + (ID) 3150
Total energy: -258470.0 ( -95.17 by residue)
QMean score : 0.451
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