Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELTKENFQKLDLIHLSLENRHSMSEIIDILSESYIEITQSGVVKDYAYYKSLTTLG---DSNLAIMEYDVKILDETKVLSYYKLKNLS------ENNYTMRSNIWIFE--NGSWKLTFHQGTRII
3FSD Chain:A ((14-134))
-----DDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGHCSVIL
General information:
TITO was launched using:
RESULT:
Template:
3FSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15659 for 752 contacts (-20.8/contact) +
2D Compatibility (PS) -11719 + (NN) 1501 + (LL) 604
1D Compatibility (HY) 400 + (ID) 750
Total energy: -25623.0 ( -34.07 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_3FSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FSD-query.scw
PDB file :
Tito_Scwrl_3FSD.pdb
: