Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAKIEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILE--TDIPAIVARGRKGGSNLAAAIINAILITM
3E7D Chain:A ((4-205))
--YIRDGQAIYDRSFAIIRAEADLR----HI-PADLEKLAVRVIHACGMVDVANDLAFSEGAGKAGRNALLAGAPILCDARMVAEGITRSRL-PADNRVIYTLSDPSVPELAKKIGNTRSAAALDLWLPHIEGSIVAIGNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRGGSAMTAAAVNALAS--
General information:
TITO was launched using:
RESULT:
Template:
3E7D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156835 for 1722 contacts (-91.1/contact) +
2D Compatibility (PS) -22058 + (NN) -10896 + (LL) 408
1D Compatibility (HY) -8000 + (ID) 3250
Total energy: -200631.0 ( -116.51 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_3E7D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E7D-query.scw
PDB file :
Tito_Scwrl_3E7D.pdb
: