Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYTITTLGAEPEIQA-ELEQIQQQLFDAGGDLAT--EEGKRAYKLTSE-PVAWLEDRIDIYADEPPEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFAVARVVNYRAGETDIFYKNSELVFRNKKK
2R6T Chain:B ((9-187))
--IYTKNGDKGQTRIIGK-ILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPAD---HSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITKRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYR-----------
General information:
TITO was launched using:
RESULT:
Template:
2R6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58384 for 1304 contacts (-44.8/contact) +
2D Compatibility (PS) -18449 + (NN) -9167 + (LL) 984
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -105616.0 ( -80.99 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2R6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R6T-query.scw
PDB file :
Tito_Scwrl_2R6T.pdb
: