Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYT-GEVEGVIAEQLCGTNGFGYDPLFFLPE-FGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
1VP2 Chain:B ((18-203))
---VYLATTNPHKVEEIKMIAP----EWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFME-EHSYKEKMRTILKMLEGKD---RRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDP-FFIPDGYDKTFGEIP-HLKEKISHRSKAFRKLFSVLEKIL------
General information:
TITO was launched using:
RESULT:
Template:
1VP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56597 for 1508 contacts (-37.5/contact) +
2D Compatibility (PS) -19660 + (NN) -8643 + (LL) 1464
1D Compatibility (HY) -12800 + (ID) 3750
Total energy: -99986.0 ( -66.30 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1VP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP2-query.scw
PDB file :
Tito_Scwrl_1VP2.pdb
: