Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGT-TLVITITDKTRKITCEIPKDKVAKARLAIQF
1D3B Chain:A ((9-43))
------------------------------------------------------------------------------------------VLHEAEGHIVTCETNT----GEVYRGKLIEAEDNMNCQM---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20290 for 159 contacts (-127.6/contact) +
2D Compatibility (PS) -3566 + (NN) 109 + (LL) 8796
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -17551.0 ( -110.38 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1D3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D3B-query.scw
PDB file :
Tito_Scwrl_1D3B.pdb
: