Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLER---ETVTKRALLSILLETNSEKYPTQTDFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVSDGNHILEDAFAFMEQALFRPNVANDAFNEETLTREKENLKSSLEGIY-DDKIRFASKRLVEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDTIEIFICGDVTKEEVMPLI-EKMAFSPRPERKG-IFYTKEAPKEVRVIHEQQAINQGKLVLGYQTETLF---GDDDFVALQLANGLLGGFANSKIFINVREKASLAYYASSRIDS--F--KGYMIISAGI-DEVNYEQALKIIEEQVVAMKQGNFTDDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRDA-NLDLENWIAKIKQATKEEVVAAINKIKPD--TIYFLSKGGEELHGKNHI |
| 3AMI Chain:A ((33-450)) | ---TFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVG-PGEFSKRVAAM-GGRDNAFTTRD----YTAYYQQVPSS--------RLSDVMGLEADRMANL-----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPP------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141732 for 3291 contacts (-43.1/contact) +
2D Compatibility (PS) -43644 + (NN) -18590 + (LL) 696
1D Compatibility (HY) -11600 + (ID) 3150
Total energy: -218020.0 ( -66.25 by residue)
QMean score : 0.517
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