Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVD----VILIQADFDDLASLTEIEKQVFQLDAFIHAAGHAHYSLFQDTTDTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
4BO7 Chain:D ((28-268))
-----KVALVTGASRGIGQAIALELGRLGA-VVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNA------------DDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BO7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180916 for 1855 contacts (-97.5/contact) +
2D Compatibility (PS) -24679 + (NN) -7402 + (LL) 972
1D Compatibility (HY) -14400 + (ID) 4100
Total energy: -230525.0 ( -124.27 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4BO7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BO7-query.scw
PDB file :
Tito_Scwrl_4BO7.pdb
: