Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNK-RLIILL-----ECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGLARYFWHYVAG----VLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLPK
1Q77 Chain:A ((1-138))
-SNAMKVLLVLTDAYSDC--EKAITYAVNFSE---------KLGA-ELDILAVLEDVYNLERANVTFGLPF----PPEIKEESKKRIERRLREVWEKLTG------------STEIPGVEYR-----IGPLSEEVKKFVEGKGYELVVWACYP---------------SAYLCKVIDGLNLASLIVK---------
General information:
TITO was launched using:
RESULT:
Template:
1Q77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165668 for 874 contacts (-189.6/contact) +
2D Compatibility (PS) -14195 + (NN) -5100 + (LL) 4224
1D Compatibility (HY) -9200 + (ID) 1450
Total energy: -191389.0 ( -218.98 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_1Q77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q77-query.scw
PDB file :
Tito_Scwrl_1Q77.pdb
: