Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEILQNNGITDFTHLSFVELDLSKDEGWKEAMLDCEYVLSVASPVFFGKFKNEEELISPAIEGITRILQAAKEAK-VKRVVMTSNFGAIGFSNADKNSITTEAYWTD---ELAKGLSA--YEKSKLIAEKEAWKFMENETELEFATINPVAIFGPSQSNHVSGSFDLLKNLLNGSMKRVINIPL-NVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVDKMPKKTLPNAAIRAAALFSKHAKEGELMINMNRQISNSKARDVLGWKPISTKEEAVLAAVDSLAKYGLLD |
3C1T Chain:C ((7-273)) | ---TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAE--THLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQE-HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK-ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEG-RYICSSHDCI-ILDLAKMLREKYPE------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C1T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126056 for 2112 contacts (-59.7/contact) +
2D Compatibility (PS) -28375 + (NN) -10801 + (LL) 6004
1D Compatibility (HY) -19200 + (ID) 4350
Total energy: -182778.0 ( -86.54 by residue)
QMean score : 0.486
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