Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSNYQDADFVQAGAKIVETAKEAW-DVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTLAKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLGGVPGVERSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLMSNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVVKQMIPGSVLVDIAIDQGGIFETTDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLEAAVQNDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI |
2VHX Chain:E ((1-370)) | MRVGIPTETKNNEFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGS-RPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDLGVPFTEPASVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VHX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247674 for 3406 contacts (-72.7/contact) +
2D Compatibility (PS) -40246 + (NN) -11230 + (LL) -76
1D Compatibility (HY) -33200 + (ID) 10100
Total energy: -342526.0 ( -100.57 by residue)
QMean score : 0.542
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