Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELT---DDYQKANVIISIGGDGAFLKSVRETGFRQDCLYAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLVRRYPTIYGTVNN----TKAFYVLNEFNIR-SSIIRTLTMDLYINDSHFETFRGDGMVISTPTGSTAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGNNEFPMIGMDSEA-LSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL
1U0T Chain:A ((5-298))
--RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLS-----CELVLVLGGDGTFLRAAELARN-ASIPVLGVN-LGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALF-----GRPMVTSPEATIAIEIEAD-GH-D-ALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFR
General information:
TITO was launched using:
RESULT:
Template:
1U0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134907 for 2066 contacts (-65.3/contact) +
2D Compatibility (PS) -27598 + (NN) -10488 + (LL) 1432
1D Compatibility (HY) -15200 + (ID) 2650
Total energy: -189411.0 ( -91.68 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1U0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U0T-query.scw
PDB file :
Tito_Scwrl_1U0T.pdb
: