Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
2J41 Chain:C ((5-197))
---KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS-------------------QSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAK---------
General information:
TITO was launched using:
RESULT:
Template:
2J41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84801 for 1262 contacts (-67.2/contact) +
2D Compatibility (PS) -18947 + (NN) -8505 + (LL) 2696
1D Compatibility (HY) -19600 + (ID) 5500
Total energy: -134657.0 ( -106.70 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_2J41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J41-query.scw
PDB file :
Tito_Scwrl_2J41.pdb
: