Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRILNNKWSIRIIALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNPTTSDSNNQDTDTTDNNTDDSGDNNTKISKSFSNMQVYMSGLKNT-FDAQMITPANGKVSVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAY-VINPRQADFIITDKEASIEVPSKST |
| 3LYW Chain:A ((6-84)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLSLIAKNTPANSMIMTK-LP--S-VRVKTEGYNP---SINVNELFAYVDLSGSEPGEHDYEVKVEP-IPNIKIVEISPRVVTLQLE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LYW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10521 for 437 contacts (-24.1/contact) +
2D Compatibility (PS) -7914 + (NN) 1090 + (LL) 22740
1D Compatibility (HY) 400 + (ID) 250
Total energy: 5545.0 ( 12.69 by residue)
QMean score : -0.069
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