Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQKTVELVEKEHGTGLAVVANVTKQEDIENMINQAIEAFGTLDILVNNAGIMDNFVPAGELTDELWDKVFAINTTGVMRATREALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASKHAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDEFGQERAMIGMGINPRAGDASEIAKVALFLASDDSSFVNGTVITADAGWTAY
4URE Chain:B ((3-247))
---LEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIGIEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNV--PLE--TRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGGYLA-
General information:
TITO was launched using:
RESULT:
Template:
4URE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145311 for 2184 contacts (-66.5/contact) +
2D Compatibility (PS) -27084 + (NN) -10666 + (LL) 388
1D Compatibility (HY) -16000 + (ID) 5000
Total energy: -203673.0 ( -93.26 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4URE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URE-query.scw
PDB file :
Tito_Scwrl_4URE.pdb
: