Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
1QWZ Chain:A ((20-233))
-----------------------------AMEDKQERANYEKLQQKFQM--LMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIK-
General information:
TITO was launched using:
RESULT:
Template:
1QWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51853 for 1654 contacts (-31.4/contact) +
2D Compatibility (PS) -22779 + (NN) -7070 + (LL) 2588
1D Compatibility (HY) -19200 + (ID) 3750
Total energy: -102064.0 ( -61.71 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1QWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QWZ-query.scw
PDB file :
Tito_Scwrl_1QWZ.pdb
: