Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDLPLVGIPSSSKK---L---PKRYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLEADLKSGFEGADLEADFLDF--TSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQ---------KVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGM-TASLNAPEALKEMEKMLYDN |
3LHS Chain:A ((16-294)) | --------------------------TVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSSRHKGINKELNKIA-PTLSLKSFDGDYKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFDRNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADLNPERMIIMTDHAKKD--SAEFKKLQEDATWKKLNAVKNNRVDIVDRDVWARSRGLISSEEMAKELVELSKKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LHS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73456 for 2146 contacts (-34.2/contact) +
2D Compatibility (PS) -27980 + (NN) -16353 + (LL) 3504
1D Compatibility (HY) -9200 + (ID) 2700
Total energy: -126185.0 ( -58.80 by residue)
QMean score : 0.525
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