Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEKQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHDDIVN
1RFZ Chain:A ((8-164))
---IMNNLEQTARRWLEERGVTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA------
General information:
TITO was launched using:
RESULT:
Template:
1RFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123585 for 1322 contacts (-93.5/contact) +
2D Compatibility (PS) -16992 + (NN) -7128 + (LL) 712
1D Compatibility (HY) -18400 + (ID) 5400
Total energy: -170793.0 ( -129.19 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1RFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RFZ-query.scw
PDB file :
Tito_Scwrl_1RFZ.pdb
: