Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSD---VTIDLNNPTCGDQIHLHLKMDG-DKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK
3LVL Chain:A ((3-125))
--------AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN--------T-----DIAEE------LELPPVKIHCSILAEDAIKAAIADYKSK-
General information:
TITO was launched using:
RESULT:
Template:
3LVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23604 for 975 contacts (-24.2/contact) +
2D Compatibility (PS) -12915 + (NN) -7423 + (LL) 2256
1D Compatibility (HY) -5200 + (ID) 1850
Total energy: -48736.0 ( -49.99 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3LVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LVL-query.scw
PDB file :
Tito_Scwrl_3LVL.pdb
: