Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQEL---VRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
3UWW Chain:B ((10-260))
-RTPIIAGNWKMNKTVQEAKDFVNALPT-LPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA-
General information:
TITO was launched using:
RESULT:
Template:
3UWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124631 for 2131 contacts (-58.5/contact) +
2D Compatibility (PS) -27152 + (NN) -13002 + (LL) 192
1D Compatibility (HY) -23200 + (ID) 7850
Total energy: -195643.0 ( -91.81 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3UWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWW-query.scw
PDB file :
Tito_Scwrl_3UWW.pdb
: