Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
4RYF Chain:J ((3-194))--LIPTVI--------AYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKS----


General information:
TITO was launched using:
RESULT:

Template: 4RYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127518 for 1384 contacts (-92.1/contact) +
2D Compatibility (PS) -19941 + (NN) -6557 + (LL) 404
1D Compatibility (HY) -26400 + (ID) 9200
Total energy: -189212.0 ( -136.71 by residue)
QMean score : 0.543

(partial model without unconserved sides chains):
PDB file : Tito_4RYF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RYF-query.scw
PDB file : Tito_Scwrl_4RYF.pdb: