Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE
1R0U Chain:A ((6-146))
---AMKQETPITLHVKSVIEDDGNQEVIEFRTTGFYYVKQNKVYLSYYEEHDLGKVKTIVKVSEGEVLVMRSGAVKMNQRFVTGAS-TIAKYKMSFGELELKTSTKSIQSDLD---EEKGRISIAYDMHVG----HLHNMTITYEGGT-
General information:
TITO was launched using:
RESULT:
Template:
1R0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40754 for 964 contacts (-42.3/contact) +
2D Compatibility (PS) -14212 + (NN) 2214 + (LL) 680
1D Compatibility (HY) -9200 + (ID) 1600
Total energy: -62872.0 ( -65.22 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1R0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R0U-query.scw
PDB file :
Tito_Scwrl_1R0U.pdb
: