Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDR-EQTFPTG-LKLDGYGVALPHTDPE-CVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
3OXP Chain:A ((5-149))
--LKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVV---GPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGN----DPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIAR---
General information:
TITO was launched using:
RESULT:
Template:
3OXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100817 for 1092 contacts (-92.3/contact) +
2D Compatibility (PS) -15412 + (NN) -8287 + (LL) 980
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -132736.0 ( -121.55 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3OXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OXP-query.scw
PDB file :
Tito_Scwrl_3OXP.pdb
: