Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYP-NAVPNVIHKKMAEIETEKDVT-IITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNC--GMTVTAKDYLKSDIHTD-CGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLT-DYRNKKARIFAVNKERISL-PYPFEMMESDAVKVFEEI
1M2H Chain:A ((4-236))
--KLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLW-NRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDEL
General information:
TITO was launched using:
RESULT:
Template:
1M2H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135634 for 1874 contacts (-72.4/contact) +
2D Compatibility (PS) -24202 + (NN) -9175 + (LL) 272
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -187289.0 ( -99.94 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1M2H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2H-query.scw
PDB file :
Tito_Scwrl_1M2H.pdb
: