Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MNFNFFVRSGFIGLILLF-VIQVLGIIRGLLIQSGFMDGSIDQTLLGTKLIIVPIIFFTISVIFFLLWFYKDYQKSRFPN
1IQB Chain:A ((4-89))
RCGSQGGGGTCPALWCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCS---GSKCQYRCSSS
General information:
TITO was launched using:
RESULT:
Template:
1IQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52878 for 526 contacts (-100.5/contact) +
2D Compatibility (PS) -7280 + (NN) 5299 + (LL) 464
1D Compatibility (HY) 5200 + (ID) 100
Total energy: -49295.0 ( -93.72 by residue)
QMean score : 0.034
(partial model without unconserved sides chains):
PDB file :
Tito_1IQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IQB-query.scw
PDB file :
Tito_Scwrl_1IQB.pdb
: