Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQL--IYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDA-EGNHMDKDVFRRDLGSLTDVYQVVLEKLIAL
3NUA Chain:B ((4-236))
MVNQLEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLNKEGIKTHFVEKLNDRDQLCKKVEIVPLEVIVRNVAAGSMAKRLGLEEGYELKTTVFELSYKDDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILKEAFKKQNINLIDFKLEFG-RYNGEILLADEISPDTCRFWDATTGEKMDKDRFRRDMGNVINGYREVLNRLRN-
General information:
TITO was launched using:
RESULT:
Template:
3NUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54932 for 1809 contacts (-30.4/contact) +
2D Compatibility (PS) -24466 + (NN) -4853 + (LL) 336
1D Compatibility (HY) -21200 + (ID) 6050
Total energy: -111165.0 ( -61.45 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_3NUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NUA-query.scw
PDB file :
Tito_Scwrl_3NUA.pdb
: