Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSIKKSVIGFCLGAAALSMFACVDSSQSVMAAEKDKVEITWWAFPTFTQEKAKDGVGTYEKKVIKAFEK----KNPNIKVKLETIDFTSGPEKITTAIEAGTAPDVLFDAP-GRIIQYGKNGKLADLNDLFTDQ--FIKDVNNKNIIQASKSGDKAYMYPIS-SAPFYMAFNKKMLKDAGVLKLVKEGWTTSDFEKVLKALKNKGYTPGSFFANGQGGDQGPRAFFANLYSA-PITDK--EVTKYTTDTKNSVKSMKKIVEWIKKGYLMNGS-QYD--GSADIQNFANGQTAFTILWAPAQPKTQAKLLESSKVDYLEVPFPSEDGK---PDLE-Y-LVNGFAVFNNKDENKVKASKKFITFIADDKKWGPKDVIRTGAFPVRTSFGDLY---KGDKRMMKISKWTQYYSPYY--NTIDGFSEMRTLWFPMVQSVSNGDEKPADALKDFTQKANDTIKKAAK |
3VXB Chain:A ((38-434)) | -------------------------------------TITAMVYGDD--A------VKVQDKAASRFNASAEAKKANAKVKMERIPASDYPAKLRTAMGSPNAPDIFFNWGGGSIKAYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAG-SLDGHEYGIPMRGMQPVLLFYNKSVFAEHKLT--PPT--TWDQLLDNVAKLKKAGVTPFALGGVEIWPELMWLEYLVDRIGGPQVFDKIRNGDASGWGDPAVLKAAQTVKQLVDEGAFGKGFSSVSYNNGGAPALLAKGKAGMHLMGSWEYSTQLGKFPDFAKKDLGWCAFPSFEGGAGDIRNVVGNPCNYWSVNA--RTGNKDGAIAFLRDCASEAYT-KDLI-DNGDVPTTTIAENMLDSSPNPEFAKFQYQLVQKAPNFTLSWDQAVDPDWQQPMLTEINKLFVGKSSPEQFVSALKGLK--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VXB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31778 for 3159 contacts (-10.1/contact) +
2D Compatibility (PS) -39759 + (NN) -12783 + (LL) 4388
1D Compatibility (HY) -11600 + (ID) 3100
Total energy: -94632.0 ( -29.96 by residue)
QMean score : 0.400
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