Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLT--EGSIDGIAISSAGMVDPDEGCIFYSGPQIPNYAGTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGSAKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHLSD----------GDFQDLASTTALIADVAKAHGDEISRWDGRRIFQEAKEGNEKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQ-KDYLQDKLSESLKRNLVTSLAEKTAIVFAQHENQAGMLGAYYHFKNRG |
3VOV Chain:A ((1-296)) | -MKVVGLDLGGTKIAAGVFDG-KRLLSKVVVPTPKE-GGERVAEALAEAAERAEREAGVRGEAIGLGTPGPLDFRRGVIR----NIPGVQDFPIRRILEEATGRPVFLENDANAAALAEHHLGAAQGEESSLYLTVSTGIGGGVVLGGRVLRGERGQGGELGHLTLLPGGPACGCGLEGCLEALAAGRALERDATYAFQ---RPVDTRELFRLFQAGDPKAERLVLQAARYVGIGLASLVKAFDPGVVVLGGGVALNAPEGYWEALLEAYRRYLQG--WEAPPLRRARLGAEAGLLGAALTAYLEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VOV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219373 for 2525 contacts (-86.9/contact) +
2D Compatibility (PS) -29543 + (NN) -8686 + (LL) 580
1D Compatibility (HY) -9600 + (ID) 3900
Total energy: -270522.0 ( -107.14 by residue)
QMean score : 0.448
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