Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIYDQIESALDLMTDLEREIACYFMGQPISKDALASTIVTKQLHISQAALTRFAKKCGFKGYREFVFEYLKSHETISQQLYGLQNDNTKKVFMNYQEMVSKSADIIDEEQLLEVSHMIEQADRVYFYGKGSSSLVAKEFKIRLMRLGVICEALDDTDSFSWTNSIVNDRCLVIAFSLSGNTNSVIGALKIASSHGAKTVLFTKQPHTID-YAFDKIIQVASARHLDYGN--------RISPQIPMLIMVDIIYAQFLDINKIEKERIFRETIIQR
1VIM Chain:A ((14-189))
----------------------------------------------------------------------------------------LLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV-----TPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE
General information:
TITO was launched using:
RESULT:
Template:
1VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105248 for 1305 contacts (-80.6/contact) +
2D Compatibility (PS) -17631 + (NN) -5455 + (LL) 7556
1D Compatibility (HY) -10000 + (ID) 1850
Total energy: -132628.0 ( -101.63 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIM-query.scw
PDB file :
Tito_Scwrl_1VIM.pdb
: