Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASGEKAKIQRKKSGAWSMTYKTLDGNVVATFRPMFKKTGSHCYISTSKMTKSDGN--NNFSIQIYYKGTSNVKIKMFD-------DNPEHTMQFSKKKFANNMLNRDE--------------------STTNHSYDKVLEGDLTPFM------------GQFSSDSFNQTIVDSGMTYGGYEPKDYYEGRTTVFPAITKTGYWNGITSHGSYVIKNDDLPKKIKNYYEIHVYGANSGAINSTGSLKRI-----------------FYLVPPKVEGPDGKVLSKRQVFEVGANNQLISLSYQSPDWWKRYKKSGLEKDLDVDAIYRGDFSSLKGTWRNGK-GEVLTINDDGSTDDGERISIGSTEKSRLPSVGMSSGNFGVSVYLFQIGVSNPYIENGHTS-----------DTTRPRLAIGLN-PGDFPTDAYY---YRY-- |
4C0H Chain:A ((19-445)) | -GDNEWHKLVIPKGSDWQIDLKA-EGKLIVKVNS------GIVEIFGTELAVDDEYTFQNWKFPIYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTRKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISD-ILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLVDDVYKRSLQRTSIREYFY------GSLDTALSPYAIGVDYEDLTIWKPSNVFDNE---VGRVE---LFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C0H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37844 for 2389 contacts (15.8/contact) +
2D Compatibility (PS) -36148 + (NN) -6363 + (LL) 1852
1D Compatibility (HY) -16000 + (ID) 3400
Total energy: -22215.0 ( -9.30 by residue)
QMean score : 0.184
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