Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVFNKLFKRRHSVSEEIKKDDLQEEVEATETEETVEEVIEEIPEKSELELANERADE----FENKYLRAHAEMQNIQRRSSEERQQLQRYRSQDLAKAILPSLDNLERALAVEGLTDDVKKGLEMTRDSLIQALKEEGVEEVEV-D-SFDHNFHMAVQTLPADDEHPADSIAEVFQKGYKLHERLLRPAMVVVYN
1DKG Chain:A ((34-194))
-----------------------------------AEQVDPR---DEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVA--MSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDD-VAPGNVLGIMQKGYTLNGRTIRAAMVTVAK
General information:
TITO was launched using:
RESULT:
Template:
1DKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15194 for 858 contacts (-17.7/contact) +
2D Compatibility (PS) -15924 + (NN) -3444 + (LL) 3488
1D Compatibility (HY) -10000 + (ID) 2100
Total energy: -43174.0 ( -50.32 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1DKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DKG-query.scw
PDB file :
Tito_Scwrl_1DKG.pdb
: