Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISK--IYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLDMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVILGVGDWSDQDGEYYRHPFVNALVEKGFKDAKNISSKTPVLKAVKPKKEVTKTKTKSIQEQPQTK-EQWWTKTDQFIQSHFVSILIVLGTIAILCLLAGIVLLIKRSR |
3MZF Chain:A ((11-305)) | ---------------------------------------GVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAA-GSQDAFVGLMNSYVNALGLKNTHFQTVHGLDA---------------DGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG-----IRQLNRNGLLWD---NSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTF------KGREAESKKLLTWGFRFFETVNPL-KVGKEFA-SEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTINFQLDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MZF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72141 for 2500 contacts (-28.9/contact) +
2D Compatibility (PS) -30947 + (NN) -10246 + (LL) 3912
1D Compatibility (HY) -9200 + (ID) 3500
Total energy: -122122.0 ( -48.85 by residue)
QMean score : 0.467
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