Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIITSILLLSCIFFMPTISAESFNASAKYALAVDLDSGKILYEKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDK--DIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKGATYKGKEASVRDGKEQSVIAVAKNDLKVAQKKNITKQNQLKINFKK----ELTAPITKKENLGKAYYVDLNKVGKGYLIKEPSVHLVAKDSIERSFFLKVWWNHFVRYVNEKL |
| 3MFD Chain:A ((4-329)) | -----------------------AIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIES---G--KMDQTVTVSANAVRT----EGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDH-------------ENHYSTAYDMAILTKYAMK-LKDYQKISGTKIYKAETMESVWKNKNKLLTM---LYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDP-------NDWDDHMKMFNYVFEHYQTYLIAKKGDI------PKLKGTFYESKAFIKRDITYLLTEEEKENVKINTTLLKPKKAWEKDASKIPDIVGHMEIMFNDA----TI---AKVPIYYEN----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142664 for 2750 contacts (-51.9/contact) +
2D Compatibility (PS) -33458 + (NN) -2153 + (LL) 6808
1D Compatibility (HY) -18800 + (ID) 4050
Total energy: -194317.0 ( -70.66 by residue)
QMean score : 0.502
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