Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLFSEIFKFCISILWYFILTKNKGVVVMRAWKGIVLILSSIVVTLVAWQNAGLSEFVVPGLALTSLSLTFLLSTKFRILESYFQGIENMYFYHKVMAVFSMILLLLHKIGLGQGGHGSEFAKTIGSAGLYLFLSIVFVAYFGNFLKYEIWRFIHRFVYLVYILGLVHTFLILGDRILGNTLLSLIVLGYAVIGVISGFYIIFLYSRMRFRRVGYVQKVTHLNHDTTEIEIAMKR---PYRYDYGQFTFLKIYQAGFESAAHPFSISGGHD--RVIFLTVKASG--D-YTKSIYKQLKVGTKIALDRAYGHMLFDKDKKEQVWIAGGIGITPFISFIRENSIL-TKRVDFFYTFSNQDNLIYQDMLESYAKANPNFKLHLNNSSLQGRLDFSQSVF--EGQPTIFMCGPTSMTSTYAKVFRQKDAKSRLVYEGFSFRDSWLSIFLLKTFDKVYSNLIK |
| 2PIA Chain:A ((8-231)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPN----GSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFILVAGGIGITPMLSMARQLRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWR-SDVKIHHDHGDPTKAFDFWSVFEKSKPAQHVYCCGPQALMDTVRDMTG-HWPSGTVHFESFGATNTNARENTPFTVRLSRSGTSF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PIA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141283 for 1648 contacts (-85.7/contact) +
2D Compatibility (PS) -22695 + (NN) -4198 + (LL) 20236
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -156890.0 ( -95.20 by residue)
QMean score : 0.479
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