Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MAK--KDLTKIDRDLEEAKKKVADLENEKRQAEENLQKQIGKLYVQIQLKKDKSQSYETILDD-----LKTELELIKQEEKARREE-AKNRQLTSSDEH-----
3NSW Chain:A ((1-106))
GSHMEYCPKMLSEIRQEDINDVETVAYVTVTGKTAR-SYNLQYWRLYDVPKTAPSQWPSFGTLRDDCGNIQLTADTDYVLGCKSGNQDCFVKLHDGLSQKEKDLLKE
General information:
TITO was launched using:
RESULT:
Template:
3NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 45823 for 557 contacts (82.3/contact) +
2D Compatibility (PS) -8716 + (NN) 5908 + (LL) 104
1D Compatibility (HY) -2800 + (ID) 900
Total energy: 39419.0 ( 70.77 by residue)
QMean score : -0.056
(partial model without unconserved sides chains):
PDB file :
Tito_3NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NSW-query.scw
PDB file :
Tito_Scwrl_3NSW.pdb
: