Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSN-QRIPSDGSNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
1RLJ Chain:A ((6-131))
QSNAMVQIIFDSKTGNVQRFVNKTGFQQIRKVD---EMDHVDTPFVLVTYTTNFG------QVPASTQSFLEKYA--HLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSS
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84875 for 986 contacts (-86.1/contact) +
2D Compatibility (PS) -13111 + (NN) -5030 + (LL) -636
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -111552.0 ( -113.14 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: