Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDVVEKQTAKSFIMNVLNGLALGTVIVLIPGAILGELMKALLPMWSGFATLIAATAVATSMMGLVIGIMVGLNFKFNPIQSASLGLAVMFAGGAATFLKGAIM-LKGTGDIINMGITAALGVLLIQFLSDKTKSFTLIVIPTVTLLLVGGVGHVLLP-YVKMITTMIGQGIASLLGLQPVLMSILIAMIF-CFLIVSPITTVGIALAISLSGIGSGAANLGICAASFGLCMAGWSVNSKGTALAHVLGSPKISMANVLAKPKIMLPMISSAAILGILGALFNIQGTPASAGFGISGLIGPINAL---NLAKGGWSVMNMLLIIIIFVAAPIILN---FIFNYLFIKVLKIIDPMDYKLDI--- |
| 3U4T Chain:A ((230-487)) | ----VEFRYADFLFKN-------------NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK-------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-------DTTR----------------------LDMYGQIGSYFYNKG------------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--EYVKADSSFVKVLEL--------------------------KPNI------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-DPTNKKAIDGLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182242 for 1833 contacts (-99.4/contact) +
2D Compatibility (PS) -24959 + (NN) 240 + (LL) 9796
1D Compatibility (HY) 12800 + (ID) 1050
Total energy: -185415.0 ( -101.15 by residue)
QMean score : 0.179
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