Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYKKRRFFMSKNNNTTCLIETAIFAALAMALSMIPDFASWFTPSFGA----IPLILFALRRGTKYGLFAGLIWGLLHFVLSKVYYLS--LSQVFIEYILAFISMGLAGVFSAKFKDALSSSSKTKALSLALSGAILATFVRYVWHYIAGVIFWASYAPKGMSATLYSLSVNGTAGLLTLFFVVISIIILVISYPSFFLPKK
4RFS Chain:S ((3-200))
------------RHKTFRLVVDALLMAIVLLQNLVPFLGYIPFGPFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAA---LTNTVLVLGLVFLFYQTPAVLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLKPQ
General information:
TITO was launched using:
RESULT:
Template:
4RFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179598 for 1412 contacts (-127.2/contact) +
2D Compatibility (PS) -18568 + (NN) -5705 + (LL) 1688
1D Compatibility (HY) -10400 + (ID) 1500
Total energy: -214083.0 ( -151.62 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_4RFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFS-query.scw
PDB file :
Tito_Scwrl_4RFS.pdb
: