Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
1PSM Chain:A ((1-38))
EAYKKAKQASQDAEQAAKDAENASKEAEEAA----------KEAVNLK
General information:
TITO was launched using:
RESULT:
Template:
1PSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 29 for 143 contacts (0.2/contact) +
2D Compatibility (PS) -3738 + (NN) 2654 + (LL) 912
1D Compatibility (HY) 4000 + (ID) 350
Total energy: 3507.0 ( 24.52 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_1PSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSM-query.scw
PDB file :
Tito_Scwrl_1PSM.pdb
: