Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKE-EGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGA-FKLPVEVVRYGSERL---FRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
1LK5 Chain:D ((3-229))
VEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIFNAKAELRMGVNKDG-PVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER
General information:
TITO was launched using:
RESULT:
Template:
1LK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97146 for 1924 contacts (-50.5/contact) +
2D Compatibility (PS) -24019 + (NN) -7296 + (LL) -76
1D Compatibility (HY) -21200 + (ID) 4500
Total energy: -154237.0 ( -80.16 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_1LK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK5-query.scw
PDB file :
Tito_Scwrl_1LK5.pdb
: