Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILTLFPEMF-APLEHSIVGKAKERGLLEINYHNFRE-NAEKSRHVDDEPYGGGQGMLLRAQPIFDTID---KIDAQKARVILLDPAGRTFDQDFAEELSKEDELIFICGHYEGYDER-IKSLVTDEVSLGDFVLTGGELAAMTMVDATVRLIPEVIGKETSHQDDSFSSGLLEYPQYTRPYDYLGMTVPDVLMSGHHENIRKWRLEQSLRKTLERRPDLLENYAMTDEERLILEKIKTEIERTDTVNEQNNL
4YVI Chain:B ((21-263))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS----------
General information:
TITO was launched using:
RESULT:
Template:
4YVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123140 for 1669 contacts (-73.8/contact) +
2D Compatibility (PS) -25589 + (NN) -11686 + (LL) 772
1D Compatibility (HY) -23200 + (ID) 6150
Total energy: -188993.0 ( -113.24 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4YVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVI-query.scw
PDB file :
Tito_Scwrl_4YVI.pdb
: