Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
1VHT Chain:C ((6-179))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADH--ANMIAADGTL-----------------WLNALLHPLIQQETQHQ--IQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHY
General information:
TITO was launched using:
RESULT:
Template:
1VHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58364 for 1110 contacts (-52.6/contact) +
2D Compatibility (PS) -17157 + (NN) -10153 + (LL) 1152
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -97172.0 ( -87.54 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1VHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHT-query.scw
PDB file :
Tito_Scwrl_1VHT.pdb
: