Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
3EK5 Chain:F ((6-243))
-ELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK-VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQGRS--
General information:
TITO was launched using:
RESULT:
Template:
3EK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -210216 for 2191 contacts (-95.9/contact) +
2D Compatibility (PS) -25960 + (NN) -14789 + (LL) 112
1D Compatibility (HY) -21200 + (ID) 6100
Total energy: -278153.0 ( -126.95 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3EK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EK5-query.scw
PDB file :
Tito_Scwrl_3EK5.pdb
: