Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
3CJT Chain:F ((2-138))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKG-HKPGREKVGR---EQVLEIAKQKMP------LEAAARMIAGSARSMGVEVVG
General information:
TITO was launched using:
RESULT:
Template:
3CJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65929 for 837 contacts (-78.8/contact) +
2D Compatibility (PS) -13831 + (NN) -5245 + (LL) 896
1D Compatibility (HY) -12000 + (ID) 4100
Total energy: -100209.0 ( -119.72 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3CJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJT-query.scw
PDB file :
Tito_Scwrl_3CJT.pdb
: