Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVRLAFPNEIDQIMLLIE-EARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIE--DGMLATYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIE---GHKGPDFRCDTHEKNVTMQHILNKLGYQYCGKVPLD---GVRLAYQKIKEKGETSIYREIDERNPM
3LOD Chain:A ((2-152))
YTITDIAPTDAEFIALIAALDAWQET-----------------LDLSQLPPQTVIALAIRSPQGEAVGCGAIVLSE----------------EGFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQPDPLSVFMEKPLF----------------
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62421 for 915 contacts (-68.2/contact) +
2D Compatibility (PS) -14406 + (NN) -6553 + (LL) 2184
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -85146.0 ( -93.06 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: