Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDK------YQLDP-DLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGS--AQMSTLDKIVYVADYIEHNRDF-------PGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
3M1T Chain:A ((103-262))
----------------------LADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAEIGALLAQS-WKFT-PHLVKGIQFQNHPKSAEPYSKLAGMLAMAKQIAADWDKIPDDERTSWLAQINILAGIKVDLGGLAEKLAKMHGQGMEMGKQLA--------------
General information:
TITO was launched using:
RESULT:
Template:
3M1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35394 for 1119 contacts (-31.6/contact) +
2D Compatibility (PS) -15417 + (NN) -4688 + (LL) 2652
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -57647.0 ( -51.52 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_3M1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1T-query.scw
PDB file :
Tito_Scwrl_3M1T.pdb
: