Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1LQW Chain:B ((1-174))
------------MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIP--DDGSGK------SYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV-
General information:
TITO was launched using:
RESULT:
Template:
1LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70453 for 1347 contacts (-52.3/contact) +
2D Compatibility (PS) -18062 + (NN) -3641 + (LL) 1488
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -113768.0 ( -84.46 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQW-query.scw
PDB file :
Tito_Scwrl_1LQW.pdb
: