Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSGNTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAH---NNVKNCIGIVGSGNRN-FNNQYCLTAKQYSERFGF-PMLG-----------------------DFELRGTS-SDVERIANIIVETLSNFKA
2BMV Chain:A ((2-163))
-GKIGIFFGTDSGNAEAIAEKISKAIGNAE-----VVDVAKASKEQFNSFTKVILVAPTAGA---GD-------LQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSFA-
General information:
TITO was launched using:
RESULT:
Template:
2BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90972 for 1073 contacts (-84.8/contact) +
2D Compatibility (PS) -14139 + (NN) -1663 + (LL) 132
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -111792.0 ( -104.19 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMV-query.scw
PDB file :
Tito_Scwrl_2BMV.pdb
: